PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000183451
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 260aa    MW: 30096.9 Da    PI: 9.1271
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000183451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.3e-191865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+ +G g+W+++ar  g++R +k+c++rw +yl
    MDP0000183451 18 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 65
                     79********************************************97 PP

2Myb_DNA-binding53.94.2e-1771115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ ++vd+++++G++ W+tIar ++ gRt++++k++w+++
    MDP0000183451  71 RGQITPHEERIIVDLHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 115
                      7888******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8161369IPR017930Myb domain
SuperFamilySSF466891.98E-3015112IPR009057Homeodomain-like
SMARTSM007171.1E-161767IPR001005SANT/Myb domain
PfamPF002492.1E-171865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-241972IPR009057Homeodomain-like
CDDcd001673.10E-122065No hitNo description
PROSITE profilePS5129419.76470120IPR017930Myb domain
SMARTSM007171.1E-1470118IPR001005SANT/Myb domain
PfamPF002499.9E-1471115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2473119IPR009057Homeodomain-like
CDDcd001672.59E-1075116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAGHHMGWGL IEEEGWRKGP WTAEEDRLLI EYVRVHGEGR WNSVARLAGL KRNGKSCRLR  60
WVNYLRPDLK RGQITPHEER IIVDLHARWG NRWSTIARSL PGRTDNEIKN YWRTHFKKKA  120
VKAPSDASEK AKNRLLRRQQ FHQQQQQLQQ INQPDVKKIM ALLDENDNNK ISSCWPQVKP  180
DSETSTTTTV YPNTADQEQG FFCSMLHGNV YMPEPASTNE DNYLWDGLWN LDDIHGNFNT  240
ASACSTGKPS LLTNLVVPFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271812027128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008366333.10.0PREDICTED: myb-related protein 305
TrEMBLM5XSD51e-136M5XSD5_PRUPE; Uncharacterized protein
STRINGGLYMA20G20980.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.19e-87myb domain protein 305